updated 5.6 years ago by
anasmith162
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written 5.6 years ago by
s.rezaalavian
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I think it will capture it automatically. E.g. if you use the method that focuses on genes lowly or not affected by the treatment, then the…
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hi,
I just noticed this popped up on the support site. There are often questions about statistical design plans, and unfortunately I don…
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Leonardo Collado Torres
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I dove a bit deeper to understand more the differences between `scuttle::logNormCounts()` and `edgeR::cpm(log = TRUE)` at https://github.co…
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Leonardo Collado Torres
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Thanks for the answer James! I had forgotten about the "PM" part of CPM when I met with Kinnary yesterday!
Comment: edgeR::cpm() results in negative values from raw counts of 0
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Leonardo Collado Torres
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Thank you Gordon for the detailed answer, examples, and link to the unpublished thesis!
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